SRX122632
GSM881353: E14 d0 H3K4me2 ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells (E14)
cell type
mouse embryonic stem cells (E14)
ChIP
H3K4me2

Sequenced DNA Library

library_name
GSM881353: E14_d0_H3K4me2_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21299341
Reads aligned (%)
96.7
Duplicates removed (%)
15.5
Number of peaks
23839 (qval < 1E-05)

mm9

Number of total reads
21299341
Reads aligned (%)
96.5
Duplicates removed (%)
15.6
Number of peaks
23773 (qval < 1E-05)

Base call quality data from DBCLS SRA