Curated Sample Data


Genome
mm9
Antigen Class
TFs and others
Antigen
Stat1
Cell type Class
Blood
Cell type
Dendritic Cells

Cell type information


MeSH Description
ANTIGEN-PRESENTING CELLS of dendritic cell morphology found in the LYMPH NODES and other lymphoid tissues.

Attributes by Original Data Submitter


source_name
bone marrow
cell type
bone marrow-derived dendritic cells
strain
C57BL/6
chip antibody
Stat1
treatment
LPS
time
60 min
chip antibody manufacturer 1
Santa Cruz
chip antibody catalog number 1
sc-346
chip antibody manufacturer 2
Bethyl
chip antibody catalog number 2
A302-753A

Metadata from Sequence Read Archive

Library Description


library_name
GSM881158: ChIP-Seq of Stat1 60 min post LPS stimulation
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina HiSeq 1000

External Database Query

Logs in read processing pipeline


Number of total reads
2645609
Reads aligned (%)
93.9
Duplicates removed (%)
8.3
Number of peaks
58 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA