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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: DNase-Seq
wikigenes
PDBj
CellType: Fetal skin
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX121267
Chromatin accessibility assay of Fibroblasts, Fetal Skin, Upper Back
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
DNase-seq
Antigen
DNase-Seq
Cell type
Cell type Class
Epidermis
Cell type
Fetal skin
NA
NA
Attributes by original data submitter
Sample
MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Cell Culture
CELL_TYPE
Fibroblasts, Fetal Skin, Upper Back
MARKERS
NA
CULTURE_CONDITIONS
None
DONOR_ID
H-24259
DONOR_AGE
day 97
DONOR_HEALTH_STATUS
NA
DONOR_SEX
male
DONOR_ETHNICITY
NA
PASSAGE_IF_EXPANDED
short term
sample_term_id
CL_0002620
Sequenced DNA Library
library_name
DS19706
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
73666622
Reads aligned (%)
70.9
Duplicates removed (%)
40.1
Number of peaks
137943 (qval < 1E-05)
hg19
Number of total reads
73666622
Reads aligned (%)
70.6
Duplicates removed (%)
40.8
Number of peaks
137727 (qval < 1E-05)
Base call quality data from
DBCLS SRA