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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Suz12
wikigenes
PDBj
CellType: mESC derived neural cells
ATCC
MeSH
RIKEN BRC
SRX121227
GSM878558: NP RESTko Suz12 biological replicate a; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Suz12
Cell type
Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
Suz12 ChIP in RESTko NP cells
background strain
Black Agouti 129
genotype/variation
RESTko
cell type
Neuronal Progenitor (NP) Cells
antibody
anti-Suz12
Sequenced DNA Library
library_name
GSM878558: NP_RESTko_Suz12_biological_replicate_a
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
41448297
Reads aligned (%)
91.8
Duplicates removed (%)
30.4
Number of peaks
3662 (qval < 1E-05)
mm9
Number of total reads
41448297
Reads aligned (%)
91.6
Duplicates removed (%)
30.5
Number of peaks
3671 (qval < 1E-05)
Base call quality data from
DBCLS SRA