SRX121226
GSM878557: NP RESTwt Suz12 biological replicate b; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Suz12

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived neural cells
NA
NA

Attributes by original data submitter

Sample

source_name
Suz12 ChIP in wildtype NP cells
background strain
Black Agouti 129
genotype/variation
RESTwt
cell type
Neuronal Progenitor (NP) Cells
antibody
anti-Suz12

Sequenced DNA Library

library_name
GSM878557: NP_RESTwt_Suz12_biological_replicate_b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
48668717
Reads aligned (%)
96.0
Duplicates removed (%)
39.6
Number of peaks
3965 (qval < 1E-05)

mm9

Number of total reads
48668717
Reads aligned (%)
95.8
Duplicates removed (%)
39.7
Number of peaks
4026 (qval < 1E-05)

Base call quality data from DBCLS SRA