SRX121181
GSM878158: HeLa (p77-infected) γ-H2AX ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.XS139ph

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
chip antibody
γH2AX
antibody catalog number
05-636
antibody vendor
Millipore
infection
p77

Sequenced DNA Library

library_name
GSM878158: HeLa (p77-infected) γ-H2AX ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35708214
Reads aligned (%)
83.8
Duplicates removed (%)
50.1
Number of peaks
19313 (qval < 1E-05)

hg19

Number of total reads
35708214
Reads aligned (%)
82.5
Duplicates removed (%)
50.5
Number of peaks
18756 (qval < 1E-05)

Base call quality data from DBCLS SRA