Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived pancreatic cells
NA
NA

Attributes by original data submitter

Sample

source_name
human pancreatic MPCs
cell type
HPSCs-derived MPCs (stage 4)
antibody
MED1 (Bethyl laboratories, A300-793A)
genotype
PTF1A+/+

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
MPCs were crosslinked with 1% PFA, lysed and sonicated with Covaris S220. DNA-protein complexes were isolated with antibodies, as described in Miguel-Escalada et al 2019. NEBNext Ultra II DNA library Prep Kit (New England Biolabs)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
24467303
Reads aligned (%)
97.9
Duplicates removed (%)
8.2
Number of peaks
4452 (qval < 1E-05)

hg19

Number of total reads
24467303
Reads aligned (%)
97.5
Duplicates removed (%)
9.0
Number of peaks
4418 (qval < 1E-05)

Base call quality data from DBCLS SRA