Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293 Flp-in T-REx pcDNA5 Rpb1 Amr E1126G
cell line
HEK293
growth conditions
DMEM 10% FCS,+ hygromycin + blasticidin + doxycycline + a-amanitin
antibody
rabbit anti pan CTD (Schroeder eta l Genes Dev. 14:2435, 2000)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
cross-linked Chromatin was sonicated with a Bioruptor IPs from 1-2 mg of cross-linked extract were immunoprecipitated, and prepared for illumina library construction by repair with Klenow, T4 DNA polymerase and T4 polynucleotide kinase, A-tailing with Klenow exo-, ligation to branched adaptors, gel purification of ~200bp fragments, and amplification (18cycles) with Illumina Tru-seq primers using Phusion DNA polymerase.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
10580185
Reads aligned (%)
65.1
Duplicates removed (%)
2.5
Number of peaks
5442 (qval < 1E-05)

hg19

Number of total reads
10580185
Reads aligned (%)
64.9
Duplicates removed (%)
2.6
Number of peaks
5482 (qval < 1E-05)

Base call quality data from DBCLS SRA