SRX120432
GSM877343: H3K4me2 ChIP; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me2

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
splenic B cells
strain
C57BL/6
developmental stage
adult
chip antibody
H3K4me2; millipore; lot# DAM1724042; catalog# 07-030

Sequenced DNA Library

library_name
GSM877343: H3K4me2_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32446201
Reads aligned (%)
74.6
Duplicates removed (%)
28.1
Number of peaks
25935 (qval < 1E-05)

mm9

Number of total reads
32446201
Reads aligned (%)
74.4
Duplicates removed (%)
28.1
Number of peaks
25979 (qval < 1E-05)

Base call quality data from DBCLS SRA