SRX120296
GSM875814: LNCaP H3K36me3 T4hDHT ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Prostate Cancer Cell Line
antibody
H3K36me3
vendor
Abcam
cell line
LNCap
treatment
100nM of DHT and 4 hours in red-free RPMI media.

Sequenced DNA Library

library_name
GSM875814: LNCaP_H3K36me3_T4hDHT_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57567858
Reads aligned (%)
70.1
Duplicates removed (%)
45.6
Number of peaks
23308 (qval < 1E-05)

hg19

Number of total reads
57567858
Reads aligned (%)
69.8
Duplicates removed (%)
47.1
Number of peaks
23482 (qval < 1E-05)

Base call quality data from DBCLS SRA