SRX120295
GSM875813: LNCaP H3K36me3 T00 ChIPSeq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Prostate Cancer Cell Line
antibody
H3K36me3
vendor
Abcam
cell line
LNCap
treatment
none

Sequenced DNA Library

library_name
GSM875813: LNCaP_H3K36me3_T00_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
55593323
Reads aligned (%)
60.6
Duplicates removed (%)
31.6
Number of peaks
14695 (qval < 1E-05)

hg19

Number of total reads
55593323
Reads aligned (%)
60.4
Duplicates removed (%)
32.5
Number of peaks
14908 (qval < 1E-05)

Base call quality data from DBCLS SRA