SRX120220
GSM876638: Rag2.Pro-B.input [8112.1]; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Pro-B
genotype/variation
Rag2(–/–)
strain
C57BL/6
chip antibody
NA
extraction method
4-5 day culture (Cd19+ cells from Bone marrow)
tissue
Bone Marrow

Sequenced DNA Library

library_name
GSM876638: Rag2.Pro-B.input [8112.1]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6072117
Reads aligned (%)
95.8
Duplicates removed (%)
7.6
Number of peaks
326 (qval < 1E-05)

mm9

Number of total reads
6072117
Reads aligned (%)
95.6
Duplicates removed (%)
8.0
Number of peaks
364 (qval < 1E-05)

Base call quality data from DBCLS SRA