SRX120173
GSM876523: KO SA1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Stag1

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
Chromatin IP against SA1
genotype/variation
SA1-null
developmental stage
E12.5
cell type
Mouse Embryonic Fibroblasts (MEF)
strain
C57BL/6 x 129 Sv
chip antibody
SA1

Sequenced DNA Library

library_name
GSM876523: KO_SA1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35702432
Reads aligned (%)
77.0
Duplicates removed (%)
19.6
Number of peaks
617 (qval < 1E-05)

mm9

Number of total reads
35702432
Reads aligned (%)
76.8
Duplicates removed (%)
19.6
Number of peaks
699 (qval < 1E-05)

Base call quality data from DBCLS SRA