SRX120059
GSM875384: E11.5 forelimb ChIP input rep4 index4 mate

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Forelimb
MeSH Description
A front limb of a quadruped. (The Random House College Dictionary, 1980)

Attributes by original data submitter

Sample

source_name
embryonic forelimb bud
strain
C57BL/6J
tissue
forelimb bud
developmental stage
gestational day E11.5
method
ChIP-seq
chip antibody
none
sequencing run type
Paired-end 75 multiplexed

Sequenced DNA Library

library_name
GSM875384: E11.5_forelimb_ChIP_input_rep4_index4_mate
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
59231500
Reads aligned (%)
95.9
Duplicates removed (%)
10.3
Number of peaks
1041 (qval < 1E-05)

mm9

Number of total reads
59231500
Reads aligned (%)
95.7
Duplicates removed (%)
10.5
Number of peaks
1011 (qval < 1E-05)

Base call quality data from DBCLS SRA