SRX119641
GSM874641: si-CHD1-flu; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 cells
cell line
A549
transfected with
siRNA pools targeted to human CHD1
infected with
Flag-NS1 virus
time post infection
12h
antibody
anti-Flag
antibody vendor
Sigma
molecule type
crosslinked-DNA

Sequenced DNA Library

library_name
GSM874641: si-CHD1-flu
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
102027350
Reads aligned (%)
94.5
Duplicates removed (%)
5.9
Number of peaks
12277 (qval < 1E-05)

hg19

Number of total reads
102027350
Reads aligned (%)
94.1
Duplicates removed (%)
6.9
Number of peaks
11967 (qval < 1E-05)

Base call quality data from DBCLS SRA