SRX119632
GSM874632: K4me3 12h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 cells
cell line
A549
infected with
Flag-NS1 virus
time post infection
12h
antibody
anti-H3K4me3
antibody vendor
Millipore
molecule type
crosslinked-DNA

Sequenced DNA Library

library_name
GSM874632: K4me3 12h
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37971098
Reads aligned (%)
83.1
Duplicates removed (%)
3.5
Number of peaks
22726 (qval < 1E-05)

hg19

Number of total reads
37971098
Reads aligned (%)
82.5
Duplicates removed (%)
4.6
Number of peaks
22667 (qval < 1E-05)

Base call quality data from DBCLS SRA