SRX119595
GSM873981: DHS seq Control2; Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1 differentiated Control2
cell line
3T3-L1
treatment
differentiated Control2
passage
less than 10

Sequenced DNA Library

library_name
GSM873981: DHS_seq Control2
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
49960698
Reads aligned (%)
96.7
Duplicates removed (%)
45.9
Number of peaks
43037 (qval < 1E-05)

mm9

Number of total reads
49960698
Reads aligned (%)
96.6
Duplicates removed (%)
45.9
Number of peaks
43021 (qval < 1E-05)

Base call quality data from DBCLS SRA