SRX119594
GSM873980: DHS seq Dex; Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1 differentiated Dex
cell line
3T3-L1
treatment
differentiated Dex
passage
less than 10

Sequenced DNA Library

library_name
GSM873980: DHS_seq Dex
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
50194123
Reads aligned (%)
91.2
Duplicates removed (%)
17.9
Number of peaks
23255 (qval < 1E-05)

mm9

Number of total reads
50194123
Reads aligned (%)
91.0
Duplicates removed (%)
17.9
Number of peaks
23319 (qval < 1E-05)

Base call quality data from DBCLS SRA