SRX119592
GSM873978: DHS-seq TNF; Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3-L1 differentiated TNF
cell line
3T3-L1
treatment
differentiated TNF
passage
less than 10

Sequenced DNA Library

library_name
GSM873978: DHS-seq TNF
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
72204142
Reads aligned (%)
93.6
Duplicates removed (%)
16.3
Number of peaks
23543 (qval < 1E-05)

mm9

Number of total reads
72204142
Reads aligned (%)
93.3
Duplicates removed (%)
16.2
Number of peaks
23642 (qval < 1E-05)

Base call quality data from DBCLS SRA