Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RAD21

Cell type

Cell type Class
Blood
Cell type
HAP1
NA
NA

Attributes by original data submitter

Sample

source_name
HAP1-RAD21-TEV cells
protocol
ChIPseq
cell line
HAP1-RAD21-TEV cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were purified using hytonic buffer and after treatments, nuclei were fixed for Hi-C protocol Hi-C 2.0 (PMID28435001) After cells were fixed, cells or G1 sorted cells were used for Hi-C protocol Hi-C 2.0 (PMID28435001)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
37680115
Reads aligned (%)
74.8
Duplicates removed (%)
19.1
Number of peaks
538 (qval < 1E-05)

hg19

Number of total reads
37680115
Reads aligned (%)
74.0
Duplicates removed (%)
19.5
Number of peaks
329 (qval < 1E-05)

Base call quality data from DBCLS SRA