Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
C57BL/6 wild type mouse liver
strain
C57BL/6
gender
female
genotype/variation
wild type
treatment
T0901317
tissue
liver
ChIP
RNA Polymerase II
antibody vendor/provider
Diagenode

Sequenced DNA Library

library_name
GSM864684: RNAPolII ChIP WT T0901317 replicate 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
14288739
Reads aligned (%)
94.9
Duplicates removed (%)
12.4
Number of peaks
14157 (qval < 1E-05)

mm9

Number of total reads
14288739
Reads aligned (%)
94.8
Duplicates removed (%)
12.5
Number of peaks
14172 (qval < 1E-05)

Base call quality data from DBCLS SRA