SRX117981
GSM867107: H1 hESC-DS11461; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
hESCs-H1 line
cell line
hESC-H1
ChIP
H3K4me3
cell type
human embryonic stem cells

Sequenced DNA Library

library_name
GSM867107: H1_hESC-DS11461
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16223210
Reads aligned (%)
96.1
Duplicates removed (%)
9.4
Number of peaks
31216 (qval < 1E-05)

hg19

Number of total reads
16223210
Reads aligned (%)
95.7
Duplicates removed (%)
9.9
Number of peaks
31267 (qval < 1E-05)

Base call quality data from DBCLS SRA