SRX117838
GSM866350: sh92.mH2A1-ChIP; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
macroH2A1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
ATRX knockdown
cell line
K562
shRNA construct
ATRX (sh92)
chip antibody
mH2A1 (ab37264, ABCAM)

Sequenced DNA Library

library_name
GSM866350: sh92.mH2A1-ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
67219237
Reads aligned (%)
98.7
Duplicates removed (%)
50.2
Number of peaks
2636 (qval < 1E-05)

hg19

Number of total reads
67219237
Reads aligned (%)
97.7
Duplicates removed (%)
51.7
Number of peaks
2268 (qval < 1E-05)

Base call quality data from DBCLS SRA