SRX117809
GSM866198: RNA Polymerase 2 ChIP-Seq HELA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa_RNA Polymerase 2 ChIP-Seq
cell line
HeLa-S3
cell type
HELA cell culture
chip antibody
Anti-RNA polymerase II CTD repeat YSPTSPS (phospho S2) antibody
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM866198: RNA Polymerase 2 ChIP-Seq HELA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
78705792
Reads aligned (%)
78.8
Duplicates removed (%)
15.1
Number of peaks
28519 (qval < 1E-05)

hg19

Number of total reads
78705792
Reads aligned (%)
78.5
Duplicates removed (%)
15.8
Number of peaks
29761 (qval < 1E-05)

Base call quality data from DBCLS SRA