SRX117462
GSM865277: K562 G1 H3K79me2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
Chronic myeloid leukaemia
cell line
Human erythromyeloblastoid leukemia cell line K562
cell type
Cultured cancer cell line
cell cycle stage
G1
chip antibody
H3K79me2 (Abcam, Lot# 939260, cat# ab3594)

Sequenced DNA Library

library_name
GSM865277: K562_G1_H3K79me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30637768
Reads aligned (%)
99.1
Duplicates removed (%)
9.3
Number of peaks
22526 (qval < 1E-05)

hg19

Number of total reads
30637768
Reads aligned (%)
99.0
Duplicates removed (%)
9.5
Number of peaks
22627 (qval < 1E-05)

Base call quality data from DBCLS SRA