SRX116590
GSM863806: ACH3 MEF3 WT; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
ACH3_ChIPseq
strain
C57BL/6J/N
genotype/variation
homozygously constitutively null for H3f3b
cell type
mouse embryonic fibroblasts (MEF)
passages
passage 7, replicate 1
chip-antibody
H3K4Tm3

Sequenced DNA Library

library_name
GSM863806: ACH3_MEF3_WT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6935023
Reads aligned (%)
98.0
Duplicates removed (%)
24.4
Number of peaks
16016 (qval < 1E-05)

mm9

Number of total reads
6935023
Reads aligned (%)
97.9
Duplicates removed (%)
24.6
Number of peaks
16056 (qval < 1E-05)

Base call quality data from DBCLS SRA