SRX116587
GSM863803: TMK4 MEF7 KO; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
TMK4_ChIPseq
strain
C57BL/6J/N
genotype/variation
wild-type
cell type
mouse embryonic fibroblasts (MEF)
passages
passage 7, replicate 2
chip-antibody
H3K9Ac

Sequenced DNA Library

library_name
GSM863803: TMK4_MEF7_KO
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
2278959
Reads aligned (%)
98.2
Duplicates removed (%)
20.5
Number of peaks
5515 (qval < 1E-05)

mm9

Number of total reads
2278959
Reads aligned (%)
98.0
Duplicates removed (%)
21.0
Number of peaks
5512 (qval < 1E-05)

Base call quality data from DBCLS SRA