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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9ac
wikigenes
PDBj
CellType: MEF
ATCC
MeSH
RIKEN BRC
SRX116585
GSM863801: TMK4 MEF2 KO; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9ac
Cell type
Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast
Attributes by original data submitter
Sample
source_name
TMK4_ChIPseq
strain
C57BL/6J/N
genotype/variation
wild-type
cell type
mouse embryonic fibroblasts (MEF)
passages
passage 7, replicate 1
chip-antibody
H3K9Ac
Sequenced DNA Library
library_name
GSM863801: TMK4_MEF2_KO
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
5786917
Reads aligned (%)
98.3
Duplicates removed (%)
28.6
Number of peaks
9626 (qval < 1E-05)
mm9
Number of total reads
5786917
Reads aligned (%)
98.2
Duplicates removed (%)
29.0
Number of peaks
9623 (qval < 1E-05)
Base call quality data from
DBCLS SRA