Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RBBP5

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-RBBP5 ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Bethyl,A300.109A

Sequenced DNA Library

library_name
GSM831039: H1_RBBP5_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
34536695
Reads aligned (%)
48.6
Duplicates removed (%)
41.9
Number of peaks
20895 (qval < 1E-05)

hg38

Number of total reads
34536695
Reads aligned (%)
49.6
Duplicates removed (%)
41.0
Number of peaks
21132 (qval < 1E-05)

Base call quality data from DBCLS SRA