SRX116459
GSM831031: H1 JARID1A 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-JARID1A ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Abcam,ab26049

Sequenced DNA Library

library_name
GSM831031: H1_JARID1A_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
42869643
Reads aligned (%)
65.9
Duplicates removed (%)
15.9
Number of peaks
2645 (qval < 1E-05)

hg38

Number of total reads
42869643
Reads aligned (%)
67.5
Duplicates removed (%)
14.6
Number of peaks
2616 (qval < 1E-05)

Base call quality data from DBCLS SRA