Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1 hESCs-CHD1 ChIP-seq
cell type
H1 ES cells were grown in TeSR media on Matrigel (Cellular Dynamics)
chip antibody
Bethyl,A301-218A

Sequenced DNA Library

library_name
GSM831025: H1_CHD1_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
37420969
Reads aligned (%)
72.7
Duplicates removed (%)
9.9
Number of peaks
1859 (qval < 1E-05)

hg38

Number of total reads
37420969
Reads aligned (%)
74.4
Duplicates removed (%)
8.7
Number of peaks
3255 (qval < 1E-05)

Base call quality data from DBCLS SRA