SRX116427
GSM830999: K562 HP1g

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CBX3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-HP1g ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Abcam,ab10480

Sequenced DNA Library

library_name
GSM830999: K562_HP1g
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48038216
Reads aligned (%)
86.8
Duplicates removed (%)
10.2
Number of peaks
2019 (qval < 1E-05)

hg19

Number of total reads
48038216
Reads aligned (%)
85.6
Duplicates removed (%)
12.8
Number of peaks
1872 (qval < 1E-05)

Base call quality data from DBCLS SRA