SRX116418
GSM830990: K562 CHD7

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD7

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562-CHD7 ChIP-seq
cell type
K562 erythrocytic leukaemia cells (ATCC CCL-243)
chip antibody
Bethyl,A301.223A

Sequenced DNA Library

library_name
GSM830990: K562_CHD7
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41736427
Reads aligned (%)
67.9
Duplicates removed (%)
11.3
Number of peaks
930 (qval < 1E-05)

hg19

Number of total reads
41736427
Reads aligned (%)
67.4
Duplicates removed (%)
12.5
Number of peaks
1196 (qval < 1E-05)

Base call quality data from DBCLS SRA