Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

Th17 Cells

MeSH Description

A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Sample

source_name

wild-type primary Th17 cells

cell type

primary cultured T helper 17 (Th17) cells

chip antibody

input DNA

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Standard Illumina DNA library construction

Sequencing Platform

instrument_model

Illumina HiSeq 2500

mm10

Number of total reads

7737277

Reads aligned (%)

99.3

Duplicates removed (%)

8.7

Number of peaks

182 (qval < 1E-05)

mm9

Number of total reads

7737277

Reads aligned (%)

99.2

Duplicates removed (%)

8.9

Number of peaks

166 (qval < 1E-05)