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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Cardiomyocytes
ATCC
MeSH
RIKEN BRC
SRX1161607
Gata4 ChIP-exo Tbx5;Nkx2-5KO CP Replica 3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Cardiovascular
Cell type
Cardiomyocytes
NA
NA
Attributes by original data submitter
Sample
isolate
057
dev_stage
Differentiating cardiomyocyte precursors
sex
not applicable
tissue
Differentiating cardiomyocyte precursors
Sequenced DNA Library
library_name
Gata4_DKO_CP_rep3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
199406405
Reads aligned (%)
95.6
Duplicates removed (%)
94.4
Number of peaks
6159 (qval < 1E-05)
mm9
Number of total reads
199406405
Reads aligned (%)
95.4
Duplicates removed (%)
94.4
Number of peaks
6559 (qval < 1E-05)
Base call quality data from
DBCLS SRA