SRX1161574
Nkx2-5 ChIP-exo Tbx5KO CM Replica 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiomyocytes
NA
NA

Attributes by original data submitter

Sample

isolate
024
dev_stage
Differentiating cardiomyocytes
sex
not applicable
tissue
Differentiating cardiomyocytes

Sequenced DNA Library

library_name
Nkx2-5_TKO_CM_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
78904151
Reads aligned (%)
96.9
Duplicates removed (%)
86.2
Number of peaks
17810 (qval < 1E-05)

mm9

Number of total reads
78904151
Reads aligned (%)
96.8
Duplicates removed (%)
86.2
Number of peaks
17765 (qval < 1E-05)

Base call quality data from DBCLS SRA