SRX11600029
GSM5484517: HepG2 cells-INSR rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
INSR

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2 cell line
cell type
liver hepatocellular carcinoma
chip antibody
Insulin Receptor Antibody (IR) (Bethyl A303-712A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tryzol KAPA HyperPrep stranded RNA 50 bases, single-end reads

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28051661
Reads aligned (%)
97.8
Duplicates removed (%)
6.7
Number of peaks
2223 (qval < 1E-05)

hg19

Number of total reads
28051661
Reads aligned (%)
97.5
Duplicates removed (%)
7.2
Number of peaks
2174 (qval < 1E-05)

Base call quality data from DBCLS SRA