Antigen

Antigen Class

Bisulfite-Seq

Antigen

Bisulfite-Seq

Cell type

Cell type Class

Liver

Cell type

Carcinoma, Hepatocellular

MeSH Description

A primary malignant neoplasm of epithelial liver cells. It ranges from a well-differentiated tumor with EPITHELIAL CELLS indistinguishable from normal HEPATOCYTES to a poorly differentiated neoplasm. The cells may be uniform or markedly pleomorphic, or form GIANT CELLS. Several classification schemes have been suggested.

Sample

source_name

Adult Liver

strain

Avy

developmental stage

22 weeks

coat colour

Yellow

Sequenced DNA Library

library_strategy

Bisulfite-Seq

library_source

GENOMIC

library_selection

RANDOM

library_construction_protocol

Liver (left lateral lobe) was extracted from saccrificed mice. DNA was extracted using Phenol : Chloroform : EtOH precipitation.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

551859378

Reads aligned (%)

88.9

Coverage rate (×)

15.7

Number of hyper MRs

236081 (qval < 1E-05)

mm9

Number of total reads

551859378

Reads aligned (%)

90.3

Coverage rate (×)

15.7

Number of hyper MRs

235400 (qval < 1E-05)