SRX1158300
GSM1856441: ChIPseq Ring1B serum to 2i Day3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rnf2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
developmental stage
E14
chip antibody
Ring1B (Anti-Ring1B, D22F2, Cell Signaling)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
33380001
Reads aligned (%)
92.9
Duplicates removed (%)
28.7
Number of peaks
19627 (qval < 1E-05)

mm9

Number of total reads
33380001
Reads aligned (%)
92.8
Duplicates removed (%)
29.1
Number of peaks
19598 (qval < 1E-05)

Base call quality data from DBCLS SRA