SRX1158285
GSM1856427: ChIPseq H3K27me3 serum BR1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
developmental stage
E14
chip antibody
H3K27me3 (Anti-H3K27me3, 07-449, Upstate)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28728441
Reads aligned (%)
96.0
Duplicates removed (%)
17.3
Number of peaks
211 (qval < 1E-05)

mm9

Number of total reads
28728441
Reads aligned (%)
95.9
Duplicates removed (%)
17.9
Number of peaks
212 (qval < 1E-05)

Base call quality data from DBCLS SRA