Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
TauEGFP MEFs
strain background
C57BL/6
tissue
embryonic fibroblasts
overexpressed proteins
Myt1l, rtTA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq were carried out following the Farnham protocol (O'Geen et al., 2011) Libraries were generated using the NEBNext ChIP-seq Library Prep Master Mix Set for Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
55235809
Reads aligned (%)
97.0
Duplicates removed (%)
9.2
Number of peaks
555 (qval < 1E-05)

mm9

Number of total reads
55235809
Reads aligned (%)
96.8
Duplicates removed (%)
9.2
Number of peaks
604 (qval < 1E-05)

Base call quality data from DBCLS SRA