Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
E13.5 Mouse Brain
strain background
C57BL/6
tissue
E13.5 mouse brain
overexpressed proteins
endogenous

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq were carried out following the Farnham protocol (O'Geen et al., 2011) Libraries were generated using the NEBNext ChIP-seq Library Prep Master Mix Set for Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
17348079
Reads aligned (%)
98.9
Duplicates removed (%)
8.9
Number of peaks
294 (qval < 1E-05)

mm9

Number of total reads
17348079
Reads aligned (%)
98.7
Duplicates removed (%)
9.0
Number of peaks
297 (qval < 1E-05)

Base call quality data from DBCLS SRA