SRX115559
GSM859582: H2Bub MT replicate3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2Bub

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C1C12 myotubes differentiated for 96h
cell type
C2C12
chromatin preparation method
MNAse digestion
chip antibody
H2Bub, Millipore: 05-1312, clone 56
antibody lot number
DAM1588304

Sequenced DNA Library

library_name
GSM859582: H2Bub_MT_replicate3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27421664
Reads aligned (%)
87.7
Duplicates removed (%)
11.6
Number of peaks
363 (qval < 1E-05)

mm9

Number of total reads
27421664
Reads aligned (%)
87.5
Duplicates removed (%)
11.6
Number of peaks
412 (qval < 1E-05)

Base call quality data from DBCLS SRA