SRX115557
GSM859580: H2Bub MT replicate1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2Bub

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C1C12 myotubes differentiated for 96h
cell type
C2C12
chromatin preparation method
MNAse digestion
chip antibody
H2Bub, Millipore: 05-1312, clone 56
antibody lot number
DAM1588302

Sequenced DNA Library

library_name
GSM859580: H2Bub_MT_replicate1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
29143610
Reads aligned (%)
84.5
Duplicates removed (%)
11.1
Number of peaks
424 (qval < 1E-05)

mm9

Number of total reads
29143610
Reads aligned (%)
84.4
Duplicates removed (%)
11.1
Number of peaks
471 (qval < 1E-05)

Base call quality data from DBCLS SRA