SRX115551
GSM859594: H3K27me3 2'AML WT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
MLL-AF9 leukemic cell
NA
NA

Attributes by original data submitter

Sample

source_name
leukemic spleen cells, secondary, WT, H3K27me3 ChIP
background strain
C57BL/6
disease state
MLL-AF9-induced acute myeloid leukemia (AML)
cell type
leukemic spleen cells
cell origin
WT MLL-AF9 leukemic cell from 2' recipient, sorted for GFP and YFP expression
chip antibody
H3K27me3

Sequenced DNA Library

library_name
GSM859594: H3K27me3_2'AML_WT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
89074419
Reads aligned (%)
94.1
Duplicates removed (%)
20.9
Number of peaks
2225 (qval < 1E-05)

mm9

Number of total reads
89074419
Reads aligned (%)
93.9
Duplicates removed (%)
20.8
Number of peaks
2263 (qval < 1E-05)

Base call quality data from DBCLS SRA