SRX115549
GSM859592: H3K27me3 1'AML WT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
MLL-AF9 leukemic cell
NA
NA

Attributes by original data submitter

Sample

source_name
leukemic spleen cells, primary, WT, H3K27me3 ChIP
background strain
C57BL/6
disease state
MLL-AF9-induced acute myeloid leukemia (AML)
cell type
leukemic spleen cells
cell origin
WT MLL-AF9 leukemic cell from 1' recipient, sorted for GFP and YFP expression
chip antibody
H3K27me3

Sequenced DNA Library

library_name
GSM859592: H3K27me3_1'AML_WT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
115291615
Reads aligned (%)
96.0
Duplicates removed (%)
34.2
Number of peaks
2448 (qval < 1E-05)

mm9

Number of total reads
115291615
Reads aligned (%)
95.9
Duplicates removed (%)
34.2
Number of peaks
2498 (qval < 1E-05)

Base call quality data from DBCLS SRA