Antigen

Antigen Class

TFs and others

Antigen

Trl

Cell type

Cell type Class

Embryo

Cell type

1-2h embryos

NA

NA

Sample

source_name

Wild type yw embryos

developmental stage

1-2h30 AEL embryos

tissue

whole body

strain

yw

genotype

Wild type

cell cycle stage

interphase

experiment

ChIP-seq

chip antibody

anti-GAF (G. Cavalli Lab)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

1000 embryos per sample. NEBNext UltraII DNA Library Prep Kit.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

dm6

Number of total reads

15741423

Reads aligned (%)

51.6

Duplicates removed (%)

46.8

Number of peaks

5993 (qval < 1E-05)

dm3

Number of total reads

15741423

Reads aligned (%)

52.2

Duplicates removed (%)

45.1

Number of peaks

6510 (qval < 1E-05)