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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Biotin
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX115144
GSM859660: KDM5C ChIP ES; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Biotin
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
source_name
embryonic stem cells
strain
129/Ola
cell type
BirA-expressing IB10 (E14 ES cell subline)
genotype/variation
transfected with tagged Kdm5c transgenic BAC
chip antibody
streptavidin
Sequenced DNA Library
library_name
GSM859660: KDM5C_ChIP_ES
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
84545514
Reads aligned (%)
93.2
Duplicates removed (%)
22.9
Number of peaks
3003 (qval < 1E-05)
mm9
Number of total reads
84545514
Reads aligned (%)
93.0
Duplicates removed (%)
22.9
Number of peaks
2039 (qval < 1E-05)
Base call quality data from
DBCLS SRA