SRX114998
GSM859492: E14 5-hmC ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
5-hmC

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14 embryonic stem cells
passages
p18-22
strain
129P2/Ola
chip antibody
5-hmC
cell type
E14 embryonic stem cells
chip antibody manufacturer
Active Motif

Sequenced DNA Library

library_name
GSM859492: E14 5-hmC ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
58038465
Reads aligned (%)
98.8
Duplicates removed (%)
10.0
Number of peaks
98832 (qval < 1E-05)

mm9

Number of total reads
58038465
Reads aligned (%)
98.7
Duplicates removed (%)
10.0
Number of peaks
98775 (qval < 1E-05)

Base call quality data from DBCLS SRA