SRX114990
GSM859510: T-ALL mnase input replicate 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
T-ALL
NA
NA

Attributes by original data submitter

Sample

source_name
T-ALL mnase input
cell type
Notch1-IC over-expressing tumors (T-ALL)
chip antibody
none (input)

Sequenced DNA Library

library_name
GSM859510: T-ALL mnase input replicate 1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21965430
Reads aligned (%)
92.5
Duplicates removed (%)
60.4
Number of peaks
462 (qval < 1E-05)

mm9

Number of total reads
21965430
Reads aligned (%)
91.6
Duplicates removed (%)
60.3
Number of peaks
566 (qval < 1E-05)

Base call quality data from DBCLS SRA